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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73669520_73680760_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73669520 - 73680760
Intron Length:
11241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CAATCTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCAATC
Flanking Amino Acid:
DLANPPKKFRDCLFKVCPMN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
81.4
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.9
68.9
36.6
Minor 5ss
31.4
-2.1
2.5
36.7
40.4
Minor BPS
59.5
0.28
1.5
70.64
34.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106