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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73683038_73688707_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73683038 - 73688707
Intron Length:
5670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTGGA
5'SS Class:
major
3'SS Sequence:
TTCTGACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TATTTCTGACTT
Flanking Amino Acid:
FWKLRSEGDNVVVGDKVVLM
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
65.5
40.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
33.4
-1.9
3.4
43.8
44.2
Minor BPS
58.6
0.35
1.7
77.52
39.1

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106