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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73689420_73690704_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73689420 - 73690704
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CGTATCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACCACTTAATA
Flanking Amino Acid:
SSYRDDVLKGGDVVRLFHAE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
80
0.75
1
78.6
31
Major PPT
67.6
0.4
0.9
63.7
38
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
61.9
0.37
1.5
67.23
38.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106