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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73717339_73717475_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73717339 - 73717475
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
AGCGCTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATTGCTTACCC
Flanking Amino Acid:
TDEERPVMLKIGTCQTKEDK
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
66.9
0.38
1
58.7
41.2
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
56.7
0.19
2
69.89
41.4

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106