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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73717637_73721791_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73717637 - 73721791
Intron Length:
4155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTTGAATAAAT
Flanking Amino Acid:
ENGTITQNERRFVTKLLEDL
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.5
37.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77
0.61
0.9
69.7
41.5
Minor 5ss
28.4
-2.5
2.9
31.8
42.6
Minor BPS
46.2
-0.2
2.3
72.73
43.2

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106