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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73729466_73744036_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73729466 - 73744036
Intron Length:
14571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTAATACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATGTGTTTAATA
Flanking Amino Acid:
FERLSKFQDGGNNVMRTIHG
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
64.8
0.33
1
58.9
41
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
61
0.34
1.7
68.96
38.3

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106