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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73744231_73746779_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73744231 - 73746779
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
TKLKIIEILQFILSVRLDYR
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106