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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73749603_73754271_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73749603 - 73754271
Intron Length:
4669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGATG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACTGTATTT
Flanking Amino Acid:
RAEVLQAFKQVQLLVSNQDV
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.6
43
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.1
0.59
0.9
66.2
43.8
Minor 5ss
34.8
-1.7
3.4
47.9
47.8
Minor BPS
49
0.01
2.2
76.03
41.4

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106