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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73754446_73758546_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73754446 - 73758546
Intron Length:
4101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTTTGTTATAT
Flanking Amino Acid:
QTKAGEEPIEESNILSPIED
Intron Amino Acid Position:
1155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
47.6
-0.1
2.3
72.21
44.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106