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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73758892_73760258_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73758892 - 73760258
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAA
U12 Branch Point Sequence:
ATCCAGGTAATG
Flanking Amino Acid:
LDLLQIPYEKSDEKMNEVMN
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.9
42.7
Major BPS
63.3
0.33
1.2
55.4
41.7
Major PPT
88.2
0.86
0.6
87.7
22.4
Minor 5ss
34.2
-1.8
2.8
41.7
44.8
Minor BPS
37.3
-1.1
2.5
43.68
42.3

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106