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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73761770_73767213_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73761770 - 73767213
Intron Length:
5444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTATCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GGGCACTTAAAG
Flanking Amino Acid:
KKCQDMVMTELINGGEDVLI
Intron Amino Acid Position:
1335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
83.5
0.75
0.8
80.9
36.4
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
48.2
-0.2
1.7
49.41
43.2

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106