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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73767466_73768695_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73767466 - 73768695
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATATTG
Flanking Amino Acid:
VVTHDDCIPEVKIAYVNFVN
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83
0.74
0.8
77.3
31.5
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
49.2
-0.1
1.9
60.57
41.6

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106