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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73768822_73773755_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73768822 - 73773755
Intron Length:
4934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AAGTACTGAATC
Flanking Amino Acid:
FENFLVDMARVCNTTTDRKH
Intron Amino Acid Position:
1461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.9
0.72
0.7
77.6
24.4
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
52.8
0.07
1.6
60.27
38.5

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106