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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73774611_73783891_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73774611 - 73783891
Intron Length:
9281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CTTCCTCATAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATAA
Flanking Amino Acid:
ESCIKTLAEVAKNRGIAIPV
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
68.7
37.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
67
0.38
1.1
67.5
31.8
Minor 5ss
32.1
-2
3.3
35.7
41.2
Minor BPS
53.9
0.12
1.9
69
43.1

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106