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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73787161_73825231_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73787161 - 73825231
Intron Length:
38071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCTA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATTTTTATCT
Flanking Amino Acid:
LDKKTNFAEEGNNLRKILLY
Intron Amino Acid Position:
1692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
33.3
-1.9
3.6
47.7
47.8
Minor BPS
61.7
0.45
1.6
75.72
41.5

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106