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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73828162_73828781_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73828162 - 73828781
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GCTTCAAAAATT
Flanking Amino Acid:
DLTISVPKKRVKDSTLHLKE
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
46
-0.2
2.1
66.74
43.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106