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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73829039_73829972_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73829039 - 73829972
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCATCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
LCENHNRELQNFLRHQNNKT
Intron Amino Acid Position:
1938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.9
0.38
0.9
58.9
36.7
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106