About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73830174_73832643_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73830174 - 73832643
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTTCTCTTATTT
Flanking Amino Acid:
YCQGPCHENQTCIATHESNG
Intron Amino Acid Position:
2005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.7
44.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.7
0.74
0.7
81.6
28.7
Minor 5ss
42.4
-0.8
3.5
64.4
47
Minor BPS
61.2
0.43
1.6
76.56
40.7

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106