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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73840349_73859820_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73840349 - 73859820
Intron Length:
19472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AGGATATAAATC
Flanking Amino Acid:
GHNIYILAHQLARHNKTLQQ
Intron Amino Acid Position:
2114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
42.8
-0.5
1.8
46.84
36.1

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106