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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73859929_73862442_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73859929 - 73862442
Intron Length:
2514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGATCTTGAAAA
Flanking Amino Acid:
HYANHTAQIEIVRHDRTMEQ
Intron Amino Acid Position:
2150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
81.1
32.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83
0.74
0.8
77.8
35
Minor 5ss
33.3
-1.9
3.3
47.8
47.9
Minor BPS
59.2
0.28
1.5
67.66
37.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106