About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73862636_73865496_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73862636 - 73865496
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTCCCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGATT
Flanking Amino Acid:
NEMKWQKKIRNNPPLFWFSR
Intron Amino Acid Position:
2214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.7
0.6
0.7
68.8
31.6
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
59.9
0.39
1.9
85.4
34.5

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106