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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73870083_73872285_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73870083 - 73872285
Intron Length:
2203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATACTTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCTCTACA
Flanking Amino Acid:
CVHEFFYSFLLFDLVYREET
Intron Amino Acid Position:
2370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
69.4
40.9
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
69.4
0.6
1.9
84.2
35.6

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106