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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73878885_73880676_F

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73878885 - 73880676
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTTGTATCT
Flanking Amino Acid:
GDVLRKPSKDEPLFAARVVY
Intron Amino Acid Position:
2509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1.2
85.2
32.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.9
77.5
41
Minor 5ss
40
-1.1
3.4
57.4
40.7
Minor BPS
50.2
0.09
2.2
77.22
39.9

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106