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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73882252_73905252_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73882252 - 73905252
Intron Length:
23001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCC
Flanking Amino Acid:
PESYVAQMIVEKNLDWFPRM
Intron Amino Acid Position:
2618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
65.4
0.35
0.9
59.2
31.3
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
55.7
0.16
1.8
71.92
39.1

Associated Gene:

Gene:
ITPR2
Ensembl Gene ID:
ENSAPLG00000014956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015781
73637633 - 73906738
269106