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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73982456_73982633_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73982456 - 73982633
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
GTGCCCCTACCG
Flanking Amino Acid:
KRGMKRDESKETYKLPHRLI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
77.4
0.62
0.8
70.3
36.4
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
46.9
-0.3
2
54.53
45.9

Associated Gene:

Gene:
BHLHE41
Ensembl Gene ID:
ENSAPLG00000023232
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033986
73981868 - 73984029
2162