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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73982742_73982878_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73982742 - 73982878
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGT
5'SS Class:
major
3'SS Sequence:
TCTGTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCACAG
U12 Branch Point Sequence:
GGCTGTCGAGCC
Flanking Amino Acid:
DLLPEHLKLTTLGHLEKAVV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.9
39.5
Major BPS
43
-0.4
1.4
48.6
36.6
Major PPT
80.2
0.68
0.8
73.8
31.3
Minor 5ss
30.2
-2.3
3
41.4
44.7
Minor BPS
35.8
-1.1
2
41.34
38.6

Associated Gene:

Gene:
BHLHE41
Ensembl Gene ID:
ENSAPLG00000023232
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033986
73981868 - 73984029
2162