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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74381389_74387554_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74381389 - 74387554
Intron Length:
6166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTGTACTTAACC
Flanking Amino Acid:
FVDEYDPTIEDSYRKQVVID
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
85.5
0.8
0.6
85.1
22.5
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
78.1
0.86
1.4
83.57
35.7

Associated Gene:

Gene:
KRAS
Ensembl Gene ID:
ENSAPLG00000015953
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016644
74381278 - 74396658
15381