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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74387734_74389755_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74387734 - 74389755
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATCTATTAAAT
Flanking Amino Acid:
TKSFEDIHHYREQIKRVKDS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
58.9
0.36
1.7
77.41
37.9

Associated Gene:

Gene:
KRAS
Ensembl Gene ID:
ENSAPLG00000015953
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016644
74381278 - 74396658
15381