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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74408291_74408379_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74408291 - 74408379
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TCTTCCCTCAAG
Flanking Amino Acid:
RGEVLNLYKNLLYLGREYPK
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
74.1
0.54
1
72.4
32.8
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
48
-0.3
2.2
61.25
46.2

Associated Gene:

Gene:
ETFRF1
Ensembl Gene ID:
ENSAPLG00000015974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016660
74408078 - 74408430
353