About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74413716_74416147_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74413716 - 74416147
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTTACTGAA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATT
Flanking Amino Acid:
LEAKVSLYATWEHYIACDGS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.3
54.7
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
36.1
-1.6
3.1
47.1
42.6
Minor BPS
69.5
0.7
1.1
83.52
30.9

Associated Gene:

Gene:
CASC1
Ensembl Gene ID:
ENSAPLG00000015977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016677
74413632 - 74431203
17572