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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74419265_74420584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74419265 - 74420584
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATGATTTAATC
Flanking Amino Acid:
YNEATEHLLKTASMYEDSDT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
53
0.07
1.6
59.8
40

Associated Gene:

Gene:
CASC1
Ensembl Gene ID:
ENSAPLG00000015977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016677
74413632 - 74431203
17572