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Intron Name: Anas_platyrhynchos_platyrhynchos_1_74420856_74422309_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

74420856 - 74422309

Intron Length:

1454

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTTACATCA

5'SS Class:

weak_major

3'SS Sequence:

TTGGAAGTCTTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTGGAA

U12 Branch Point Sequence:

TGTGCCAAAATT

Flanking Amino Acid:

PAFILQTHNPESKESTHHSK

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.2

0.15

1.3

54.7

39.1

Major BPS

53.4

0.09

1.4

55.1

42.1

Major PPT

59.2

0.21

55.2

44.6

Minor 5ss

40.6

-1

2.8

51.1

Minor BPS

49.7

0.06

73.42

43.7

Associated Gene:

Gene:

CASC1

Ensembl Gene ID:

ENSAPLG00000015977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016677

74413632 - 74431203

17572