About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74422463_74425949_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
74422463 - 74425949
Intron Length:
3487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCTGTTG
5'SS Class:
weak_major
3'SS Sequence:
ATTTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTACTTATTT
Flanking Amino Acid:
GKKSHKRIFYVLSPQIQEEN
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.1
52.2
41.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.5
0.73
0.8
77.7
36
Minor 5ss
34
-1.8
3.5
43.3
46.2
Minor BPS
63.4
0.5
1.8
80.67
41.5

Associated Gene:

Gene:
CASC1
Ensembl Gene ID:
ENSAPLG00000015977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016677
74413632 - 74431203
17572