About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74426117_74427224_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74426117 - 74427224
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTGCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTGCTAAAG
Flanking Amino Acid:
KQVKNWNMVELLDSGLEAYR
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.4
0.39
1.1
67.2
38.1
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
45.3
-0.5
2.4
59.41
42.1

Associated Gene:

Gene:
CASC1
Ensembl Gene ID:
ENSAPLG00000015977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016677
74413632 - 74431203
17572