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Intron Name: Anas_platyrhynchos_platyrhynchos_1_74428335_74429004_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

74428335 - 74429004

Intron Length:

670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGTTTGT

5'SS Class:

major

3'SS Sequence:

CACAGTGGAAGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATCAG

U12 Branch Point Sequence:

GCTGCAGTCACA

Flanking Amino Acid:

IKVLFFLKTLKDVLSHLTGR

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.44

1.1

64.3

42.4

Major BPS

56.5

0.16

1.6

40.9

Major PPT

40.9

-0.5

1.7

34.2

39.4

Minor 5ss

40.7

-1

3.2

55.6

43.9

Minor BPS

39.8

-0.8

2.5

52.59

45.4

Associated Gene:

Gene:

CASC1

Ensembl Gene ID:

ENSAPLG00000015977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016677

74413632 - 74431203

17572