About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74429453_74430933_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74429453 - 74430933
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTGCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTTCTGCACT
Flanking Amino Acid:
EAGQDQVVFKVGEHLKDDFV
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
70
40.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
72.9
0.52
0.9
67.5
39
Minor 5ss
38.5
-1.3
2.4
46.6
41.7
Minor BPS
65.2
0.56
1.9
88.41
36.6

Associated Gene:

Gene:
CASC1
Ensembl Gene ID:
ENSAPLG00000015977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016677
74413632 - 74431203
17572