About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74433900_74435517_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74433900 - 74435517
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTGCTTAG
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTGTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CATTCCCTGATA
Flanking Amino Acid:
SLGDRGNLNKPPSSLRRVSI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.2
0
1.4
42.5
41.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.2
0.68
0.9
77.3
36.8
Minor 5ss
31.4
-2.1
4
40.8
40
Minor BPS
58.9
0.27
1.7
67.91
38.5

Associated Gene:

Gene:
LRMP
Ensembl Gene ID:
ENSAPLG00000016181
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016886
74431648 - 74439351
7704