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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74435680_74437081_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74435680 - 74437081
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
TTTTTCCTACTG
Flanking Amino Acid:
RAEMLGAINQESRVSKAVEV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
82.6
0.73
0.7
81
24.2
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
52.9
-0
2
67.26
41

Associated Gene:

Gene:
LRMP
Ensembl Gene ID:
ENSAPLG00000016181
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016886
74431648 - 74439351
7704