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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74439187_74439234_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74439187 - 74439234
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGACACTG
5'SS Class:
weak_major
3'SS Sequence:
GTGACTACCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTTGGCTGAGCA
Flanking Amino Acid:
LLKKDPVRILEGAGPTAVFV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.2
48.9
41.7
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
46.3
-0.2
1.7
46.9
40.3
Minor 5ss
37.5
-1.4
3.3
49.6
41.8
Minor BPS
48
-0.1
2.2
68.12
44.2

Associated Gene:

Gene:
LRMP
Ensembl Gene ID:
ENSAPLG00000016181
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016886
74431648 - 74439351
7704