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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74482515_74485298_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74482515 - 74485298
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCCCCCATT
Flanking Amino Acid:
LSSLRKAQEQVEEENGDHPG
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
86
0.81
0.8
79.9
32.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
49.9
0.08
2.3
81.02
40.9

Associated Gene:

Gene:
SPX
Ensembl Gene ID:
ENSAPLG00000016220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016919
74480201 - 74485357
5157