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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74492876_74492911_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74492876 - 74492911
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TAACTGTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CAGTGTCTAACT
Flanking Amino Acid:
LGRVCETINRASCYFTEGFR
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.8
0.54
1
70
40.9
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
47.7
-0.1
2.1
65.23
45.4

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960