About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74496722_74498447_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74496722 - 74498447
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACATAC
U12 Branch Point Sequence:
CTGCCCTGAAAC
Flanking Amino Acid:
SYYEPWGYTPAECTVMGIPS
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
49.1
-0
0.9
44.7
27.8
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
54.3
0.12
1.6
62.29
42.5

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960