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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74500811_74501454_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74500811 - 74501454
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTGCCCCTCATA
Flanking Amino Acid:
IMKRAIFSTQRHCLPPVTTH
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
48.6
-0.1
2.1
65.41
41.2

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960