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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74501534_74502264_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74501534 - 74502264
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
ATTTGGTAAAGT
Flanking Amino Acid:
FGKKLYNALLKGEIPDLNKI
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
77
0.61
0.9
69.9
36.5
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
42.5
-0.4
2.7
69.5
47.5

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960