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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74502325_74505710_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74502325 - 74505710
Intron Length:
3386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTACC
5'SS Class:
major
3'SS Sequence:
TTTATTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACATAAAT
Flanking Amino Acid:
LKGQAVRKQLWDTAQSVKEK
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73.4
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.8
77.2
36.9
Minor 5ss
37.2
-1.4
2.6
44.3
37
Minor BPS
58.1
0.33
1.9
80.94
39.6

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960