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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74509003_74514893_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74509003 - 74514893
Intron Length:
5891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGATGTCTACCT
Flanking Amino Acid:
EAEHMLKRNPDVVTPNGLNI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
84.6
0.78
0.8
76.4
37.6
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
42.7
-0.4
2.2
60.5
43

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960