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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74528403_74530160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74528403 - 74530160
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAACATTTAATT
Flanking Amino Acid:
MDIMKSQGCQVFFGRWLIEG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.4
0.71
0.7
77.3
24.8
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
60.3
0.4
1.5
72.78
37.7

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960