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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74530343_74540050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74530343 - 74540050
Intron Length:
9708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCATTTCTAATT
Flanking Amino Acid:
FEVSWEVTNKVGGIYTVIQT
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
50.2
0.08
1.7
64.16
41.2

Associated Gene:

Gene:
GYS2
Ensembl Gene ID:
ENSAPLG00000016252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016992
74490212 - 74540171
49960