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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74554357_74558863_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74554357 - 74558863
Intron Length:
4507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATTCCA
5'SS Class:
major
3'SS Sequence:
CTGGCCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
AAGCTTGTACCA
Flanking Amino Acid:
SCHGWILGEHAARATLLR*
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
62.2
37.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
74.1
0.54
0.9
69.6
36.7
Minor 5ss
29.3
-2.4
2.7
30.6
37.2
Minor BPS
40.8
-0.7
2
47.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016403
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027868
74554331 - 74565257
10927