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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74555707_74556493_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74555707 - 74556493
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
CTGTCAGTAATG
Flanking Amino Acid:
RVHSVSTLVKGTYGIENDVF
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
85.1
0.79
0.9
80.6
37
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
46.7
-0.3
2.3
55.85
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016403
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017126
74555539 - 74565257
9719